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    Spmip11 sperm microtubule inner protein 11 [ Mus musculus (house mouse) ]

    Gene ID: 73863, updated on 5-Mar-2024

    Summary

    Official Symbol
    Spmip11provided by MGI
    Official Full Name
    sperm microtubule inner protein 11provided by MGI
    Primary source
    MGI:MGI:1921113
    See related
    Ensembl:ENSMUSG00000022993 AllianceGenome:MGI:1921113
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tex49; 4930415O20Rik
    Summary
    Orthologous to human TEX49 (testis expressed 49). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 26.9) and large intestine adult (RPKM 2.1) See more
    Orthologs
    NEW
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    Genomic context

    Location:
    15 F1; 15 54.57 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (98468885..98487469)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (98571004..98589588)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_39662 Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene STARR-positive B cell enhancer ABC_E946 Neighboring gene small nucleolar RNA, H/ACA box 2B Neighboring gene STARR-seq mESC enhancer starr_39663 Neighboring gene cyclin T1 Neighboring gene RIKEN cDNA 9330020H09 gene Neighboring gene STARR-positive B cell enhancer ABC_E1917 Neighboring gene adenylate cyclase 6 Neighboring gene STARR-seq mESC enhancer starr_39665 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:98440580-98440763 Neighboring gene STARR-positive B cell enhancer ABC_E9921 Neighboring gene STARR-seq mESC enhancer starr_39668 Neighboring gene calcium channel, voltage-dependent, beta 3 subunit Neighboring gene DEAD box helicase 23 Neighboring gene STARR-positive B cell enhancer ABC_E8612

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    sperm microtubule inner protein 11
    Names
    testis expressed 49

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001201322.1NP_001188251.1  sperm microtubule inner protein 11

      See identical proteins and their annotated locations for NP_001188251.1

      Status: VALIDATED

      Source sequence(s)
      BC048564, BX635944
      Consensus CDS
      CCDS49722.1
      UniProtKB/TrEMBL
      Q8CDT5
      Related
      ENSMUSP00000023728.6, ENSMUST00000023728.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      98468885..98487469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)